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The Caml Hump: MyCGR


This software implements the researches of the thesis of Peggy Cénac. Use the CGR to build a new family of tests of structure of sequences (i.i.d., markovian), empirically check the level and power of the tests and apply them on DNA sequences. Generalize the dinucleotide abundance profile to a CGR-based relative abundance profile and use this profile on DNA sequences to build taxonomy trees. Define CGR-trees, which are Digital Search Trees built from sequences, and check that the empirical longest branches, shortest branches and insertion level match the theorical results of the thesis.
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Author:Peggy Cénac and Maxence Guesdon.
Last modification date:03-Jul-2006
Development status:Beta
Kind: Libraries :: Native OCaml libraries
Applications written in Caml :: Scientific software
License: Open Source :: CeCILL
Topic: Science :: Biology